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Tricky, Sticky Stuff: developing new ways to look at what makes up sedimentary biofilms in marine, river and hot spring settings


Funded PhD


3.5 years

Application deadline:

Monday 7 January 2019

About this project

Since the Archean, microbes have been present in every environment on Earth, and today at least half of global biomass is prokaryotic. Microbes within sediment are not bystanders, and recent research shows they are key agents in controlling an impressive range of processes from coastal sediment stability & resistance to storm surges, through biogeochemical cycles of carbon and nutrients in addition to remediation of industrial contamination.

Sedimentary biofilms have been present since the advent of life, and the fossil record of these communities is outstanding. They have probably had more effect on the Earth system than any other part of the biosphere. However, the physical scale of sedimentary microbes means many of their impacts are poorly understood. Harnessing these systems for geoengineering, as we have macrophytic plants, will permit us to develop passive systems for nutrient and carbon management, contaminant immobilisation and shoreline & bank stabilisation.

We have come a long way in understanding what the bacteria themselves are doing. We also know that these communities are crucially important bio-engineers, making sediment more resistant to erosion, alerting the chemistry of the water they live in and producing minerals from the ions in solution. However, our understanding is limited by our poor ability to understand the sticky stuff they produce to engineer their local environment – the Extracellular Polymeric Substances, or EPS.

This project will attack that problem directly. You will work on a range of river, hot and cold-water spring and marine settings in the UK and Italy, potentially expanding to additional sites in the USA, Oman and Turkey later in the project. Fieldwork will focus on sampling biofilm EPS materials from a range of geochemical contexts, but will also undertake fundamental sedimentological and geomorphological analysis of the sites so the context of each biofilm is properly known and recorded.

The samples will be returned to the laboratory at Hull, and analysed for its organic acid content. These organic acids are the active ingredient which permit the biofilm to interact chemically with the inorganic components of the environment in which they live. The laboratory work will include some method development work, and you will be responsible for determining the standard approaches to sampling and processing for your project, and for subsequent research within our group.

Once we have an improved understanding of the range, concentration and pattern of organic acid content within the biofilms, you will develop a toolbox for sedimentologists and geomrophologists working on biofilm related problem to assist in identifying, sampling and analysing the microbial materisl you come across within your systems.

This project will truly break new scientific ground, and set the scene for subsequent research looking at the interaction of sedimentary biofilms and their environment. We anticipate the work generating several exciting publications in the international scientific literature, and significant international interest in our findings.

The project is hosted within the Department of Geography, Geology and Environmental Science (Prof. Mike Rogerson), the Energy and Environment Institute (Dr. Chris Hackney) and the Department of Chemistry (Dr. Kevin Welham) at the University of Hull, and will also benefit from supervision from Prof. Erin McClymont of the University of Durham.

This newly formed, interdisciplinary team has the expertise and field knowledge to find and analyse the range of sites you will study, and the instruments and specialist skills needed to extract, measure and understand their makeup. The project is an exciting opportunity for a physical geography or geology student with interests in Earth System Science, wanting to do some genuinely creative research in the field of earth surface processes and sedimentary systems. 

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The University's Postgraduate Training Scheme (PGTS) provides a range of generic and discipline-specific modules to support research students through their programme. 

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The library has an exclusive lounge for postgraduate research students and a dedicated skills team to provide a wide range of study and research skills help.

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The Graduate School provides support to postgraduate research students. Offering skills development opportunities and dedicated facilities, the school is here to help you achieve your potential. 

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Research at Hull tackles big challenges and makes an impact on lives globally, every day. Our current research portfolio spans everything from health to habitats, food to flooding and supply chains to slavery.

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This project is funded by Panorama NERC Doctoral Training Partnership (DTP). They are offering a fully funded 3.5 year studentship (stipend + fees) to both UK and EU applicants at the standard UKRI rate.

We are unable to offer studentships to non-EU international candidates.

Entry requirements

The prospective student should have, or expect to receive, a first class BSc degree, or a distinction at Masters level, in an appropriate discipline.

They should have interests and experience in most, if not all, of the following topics: geochemistry (including doing measurements), sedimentology orgeomorphology, laboratory work and fieldwork. This experience together with other skills and interests that the applicant wishes to develop can be supported by the supervisors and developed during the project. A range of funding sources are available for the project which the candidate can apply to in collaboration with the supervisors.